PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G331700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 208aa    MW: 22265.4 Da    PI: 7.7214
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G331700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.18.8e-45171161100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +Ca+Ck+lrr+C+++Cv+apyfp e+p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lqqq++ql+
  Seita.7G331700.1.p  17 PCASCKLLRRRCTQECVFAPYFPPEDPHKFAIVHKVFGASNVSKMLQELPAQQRADAVSSLVYEANARMRDPVYGCVGAISYLQQQVSQLQ 107
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                          +lal+k+e
  Seita.7G331700.1.p 108 MQLALAKAE 116
                         *****9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.65316117IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-4417114IPR004883Lateral organ boundaries, LOB
Gene3DG3DSA:3.40.50.18205.7E-422145IPR029058Alpha/Beta hydrolase fold
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MAGSGSSSGS GSSSSPPCAS CKLLRRRCTQ ECVFAPYFPP EDPHKFAIVH KVFGASNVSK  60
MLQELPAQQR ADAVSSLVYE ANARMRDPVY GCVGAISYLQ QQVSQLQMQL ALAKAEILCV  120
QMQHDGHATV SSPPSAASQQ LERKQQQLME CEAYGSLLMQ NGLMNTSFNS TAAAHQQQQM  180
LAGSLGSAGN TAMMLQEACL KKESLWT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661028.11e-152PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW31e-69LBD12_ARATH; LOB domain-containing protein 12
TrEMBLK3YBQ31e-135K3YBQ3_SETIT; Uncharacterized protein
STRINGSi011647m1e-135(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.15e-59LBD family protein